About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52002SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides52003SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides52004TRANSPOSASE, PUTATIVE-RELATED
Paelopatides52005-
Paelopatides52006ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
Paelopatides52007ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
Paelopatides52008L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides52009-
Paelopatides52010-
Paelopatides52012-
Paelopatides52013-
Paelopatides52014FRIZZLED
Paelopatides52015MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides52016UNCHARACTERIZED
Paelopatides52017UNCHARACTERIZED
Paelopatides52018-
Paelopatides52019ACETYL-COA C-ACYLTRANSFERASE
Paelopatides52020REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides52021OS05G0170800 PROTEIN
Paelopatides52022F-BOX PROTEIN SKIP16
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