About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52043CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides52044-
Paelopatides52045-
Paelopatides52046BASIGIN RELATED
Paelopatides52047TRANSPOSABLE ELEMENT-RELATED
Paelopatides52048CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides52049CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides52050EXPRESSED PROTEIN
Paelopatides52051TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 4 TMCO4
Paelopatides52052-
Paelopatides52053-
Paelopatides52054REVERSE TRANSCRIPTASES
Paelopatides52055GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN
Paelopatides52056-
Paelopatides52057-
Paelopatides52058MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2
Paelopatides52059GRB10 INTERACTING GYF PROTEIN
Paelopatides52060FORKHEAD BOX PROTEIN J2 FAMILY MEMBER
Paelopatides52061FORKHEAD BOX PROTEIN J2 FAMILY MEMBER
Paelopatides52062TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 4 TMCO4
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