About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52321TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5
Paelopatides52322PHOSPHOLIPASE A-2-ACTIVATING PROTEIN
Paelopatides52323PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides52324DIMETHYLANILINE MONOOXYGENASE
Paelopatides52325-
Paelopatides52326-
Paelopatides52327GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2
Paelopatides52328ACYL-COA DEHYDROGENASE
Paelopatides52329ENDONUCLEASE-RELATED
Paelopatides52330POL PROTEIN
Paelopatides52331PROTEIN CBG26694
Paelopatides52332-
Paelopatides52333PARANEOPLASTIC ANTIGEN
Paelopatides52334PROTEIN CBG26694
Paelopatides52335ARYL HYDROCARBON RECEPTOR
Paelopatides52336RETROTRANSPOSON
Paelopatides52337PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides52338PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides52339PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides52340ACROSIN-RELATED
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