About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52661BEN DOMAIN-CONTAINING PROTEIN 6
Paelopatides52662ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides52663REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides52664REVERSE TRANSCRIPTASES
Paelopatides52665WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1
Paelopatides52666UNCHARACTERIZED
Paelopatides52667UNCHARACTERIZED
Paelopatides52668DYNEIN HEAVY CHAIN FAMILY PROTEIN
Paelopatides52669DYNEIN HEAVY CHAIN FAMILY PROTEIN
Paelopatides52670PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides52672REVERSE TRANSCRIPTASES
Paelopatides52673TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
Paelopatides52674-
Paelopatides52675-
Paelopatides52676-
Paelopatides52677-
Paelopatides52678SI:CH211-108C17.2-RELATED-RELATED
Paelopatides52679BONUS, ISOFORM C-RELATED
Paelopatides52680EXPRESSED PROTEIN
Paelopatides52681-
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