About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52637DIABETES AND OBESITY REGULATED, ISOFORM G
Paelopatides52638ZGC:162297
Paelopatides52639GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN
Paelopatides52640UNCHARACTERIZED
Paelopatides52641DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1
Paelopatides52642HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY
Paelopatides52643TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides52644CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides52649-
Paelopatides52650REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides52651RIBOFLAVIN TRANSPORTER RIBJ
Paelopatides52652T-LYMPHOCYTE ACTIVATION ANTIGEN
Paelopatides52653DIABLO HOMOLOG, MITOCHONDRIAL
Paelopatides52654RIBOSOME BIOGENESIS REGULATORY PROTEIN
Paelopatides52655CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides52656-
Paelopatides52657REGULATORY-ASSOCIATED PROTEIN OF MTOR
Paelopatides52658REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides52659TNF RECEPTOR ASSOCIATED FACTOR
Paelopatides52660-
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