About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52790-
Paelopatides52791TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides52792CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides52793VANG-LIKE PROTEIN
Paelopatides52794-
Paelopatides52795-
Paelopatides52796-
Paelopatides52797-
Paelopatides52798-
Paelopatides52799G PROTEIN-COUPLED RECEPTOR-RELATED
Paelopatides52800DYNEIN HEAVY CHAIN
Paelopatides52803INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides52805INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides52806DDB1- AND CUL4-ASSOCIATED FACTOR 15
Paelopatides52807RAD50-INTERACTING PROTEIN 1 RINT-1
Paelopatides52808RAD50-INTERACTING PROTEIN 1 RINT-1
Paelopatides52809HISTIDINE-RICH GLYCOPROTEIN
Paelopatides52810NOT56 - RELATED
Paelopatides52811-
Paelopatides52812-
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