About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52835OPSIN
Paelopatides52836-
Paelopatides52837SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides52838PR DOMAIN ZINC FINGER PROTEIN
Paelopatides52839-
Paelopatides52840-
Paelopatides52841-
Paelopatides52842LIPOXYGENASE
Paelopatides52843DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE
Paelopatides52844HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides52845-
Paelopatides52846HL01030P-RELATED
Paelopatides52847TRANSPOSON
Paelopatides52848L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides52849ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL
Paelopatides52850WSCD FAMILY MEMBER CG9164
Paelopatides52851-
Paelopatides52852-
Paelopatides52853-
Paelopatides52854ZINC FINGER PROTEIN-LIKE 1
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