About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52875MATRIX METALLOPROTEINASE
Paelopatides52876SENSOR KINASE-RELATED
Paelopatides52880RAS-RELATED PROTEIN RAB
Paelopatides52881-
Paelopatides52882-
Paelopatides52883POL PROTEIN
Paelopatides52884-
Paelopatides52885DNA TOPOISOMERASE I
Paelopatides52886L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides52887CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED
Paelopatides52888ANKYRIN REPEAT PROTEIN
Paelopatides52889PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3
Paelopatides52890PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3
Paelopatides52891-
Paelopatides52892-
Paelopatides52893-
Paelopatides52894-
Paelopatides52895TYROSINE-PROTEIN KINASE
Paelopatides52896-
Paelopatides52897-
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