About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52813-
Paelopatides52814-
Paelopatides52815ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
Paelopatides52816ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
Paelopatides52817SULFIDE:QUINONE OXIDOREDUCTASE
Paelopatides52818ABHYDROLASE DOMAIN-CONTAINING PROTEIN
Paelopatides52819ABHYDROLASE DOMAIN-CONTAINING PROTEIN
Paelopatides52820TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides52821REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides52822KH DOMAIN CONTAINING RNA BINDING PROTEIN
Paelopatides52823KH DOMAIN CONTAINING RNA BINDING PROTEIN
Paelopatides52824PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides52825-
Paelopatides52826ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides52827BONUS, ISOFORM C-RELATED
Paelopatides52828-
Paelopatides52829POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Paelopatides52830POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Paelopatides52831NETRIN RECEPTOR UNC5
Paelopatides52832-
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