About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52982ARYLSULFATASE FAMILY MEMBER
Paelopatides52983COPINE
Paelopatides52984COPINE
Paelopatides52985-
Paelopatides52986SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides52987REVERSE TRANSCRIPTASES
Paelopatides52988-
Paelopatides52989MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides5299039A RIBOSOMAL PROTEIN L50, MITOCHONDRIAL
Paelopatides52991TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA
Paelopatides52992TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA
Paelopatides52993REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides52994ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Paelopatides52995ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Paelopatides52996PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides52997ALDO/KETO REDUCTASE
Paelopatides52998ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides52999ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides53000ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides53001NEGATIVE ELONGATION FACTOR COMPLEX MEMBER B
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