About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53002MITOGUARDIN
Paelopatides53003ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides53004FI14130P
Paelopatides53005SIALIDASE
Paelopatides53006SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Paelopatides53007SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Paelopatides53008REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides53009ENZYMATIC POLYPROTEIN-RELATED
Paelopatides53010CYTOCHROME P450 FAMILY 3
Paelopatides53011RIM BINDING PROTEIN-RELATED
Paelopatides53012-
Paelopatides53013-
Paelopatides53014REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides53015LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 3
Paelopatides5301630S 40S RIBOSOMAL PROTEIN
Paelopatides53017ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides53018-
Paelopatides53020-
Paelopatides53021-
Paelopatides53022RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
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