About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53063-
Paelopatides53064-
Paelopatides53065POL PROTEIN
Paelopatides53066PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides5306740S RIBOSOMAL PROTEIN S3A
Paelopatides5306852 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides53069-
Paelopatides53070ANKYRIN REPEAT FAMILY PROTEIN
Paelopatides53071-
Paelopatides53072EPM2A-INTERACTING PROTEIN 1
Paelopatides53073EPM2A-INTERACTING PROTEIN 1
Paelopatides53074-
Paelopatides53075-
Paelopatides53076BAT2 HLA-B-ASSOCIATED TRANSCRIPT 2
Paelopatides53077-
Paelopatides53078ALPHA-AMYLASE FAMILY MEMBER
Paelopatides53079ARYLSULFATASE FAMILY MEMBER
Paelopatides53080UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE
Paelopatides53081-
Paelopatides53082-
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