About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53134CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING
Paelopatides53135MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE
Paelopatides5313760S RIBOSOMAL PROTEIN L6
Paelopatides53138UNCHARACTERIZED
Paelopatides53139-
Paelopatides53140ZGC:101858
Paelopatides53141PHOSPHATIDYLINOSITOL TRANSFER PROTEIN
Paelopatides53142-
Paelopatides53143-
Paelopatides53144ARYLSULFATASE
Paelopatides53145-
Paelopatides53146TRANSPOSABLE ELEMENT-RELATED
Paelopatides53147SLIT HOMOLOG
Paelopatides53148PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides53149-
Paelopatides53150-
Paelopatides53151MONOCARBOXYLATE TRANSPORTER
Paelopatides53152MULTICOPPER OXIDASE-RELATED
Paelopatides53153FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides53154REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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