About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53155FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides53156FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides53157COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77
Paelopatides53158KINETOCHORE-ASSOCIATED PROTEIN DSN1 HOMOLOG
Paelopatides53161-
Paelopatides53162-
Paelopatides53163-
Paelopatides53164-
Paelopatides53165-
Paelopatides53166BETA-CAROTENE DIOXYGENASE
Paelopatides53167TRANSPOSABLE ELEMENT-RELATED
Paelopatides53168TRANSPOSABLE ELEMENT-RELATED
Paelopatides53169SIT4 YEAST -ASSOCIATING PROTEIN-RELATED
Paelopatides53170UNCHARACTERIZED
Paelopatides53171CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN A
Paelopatides53172DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
Paelopatides5317352 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides53174HMG DOMAIN-CONTAINING PROTEIN 3
Paelopatides53175PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides53176-
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