About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53258TWISTED GASTRULATION PROTEIN HOMOLOG 1-A-RELATED
Paelopatides53259-
Paelopatides53260CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN
Paelopatides53261-
Paelopatides53262ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2
Paelopatides53263ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2
Paelopatides53264-
Paelopatides53265GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN
Paelopatides53266NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides53267ENZYMATIC POLYPROTEIN-RELATED
Paelopatides53268UNCHARACTERIZED
Paelopatides53269EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
Paelopatides53270EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
Paelopatides53271ENDONUCLEASE-RELATED
Paelopatides53272ENZYMATIC POLYPROTEIN-RELATED
Paelopatides53273EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER
Paelopatides53274RHO GTPASE-ACTIVATING PROTEIN 190
Paelopatides53275EGL NINE HOMOLOG-RELATED
Paelopatides53276EGL NINE HOMOLOG-RELATED
Paelopatides53277ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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