About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53359-
Paelopatides53360POU DOMAIN
Paelopatides53361-
Paelopatides53362-
Paelopatides53363-
Paelopatides53364RETROTRANSPOSON
Paelopatides53365-
Paelopatides53366-
Paelopatides53367REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides53368BUCENTAUR RELATED
Paelopatides53369-
Paelopatides53370PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides53371ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides53372TRANSIENT RECEPTOR POTENTIAL CHANNEL
Paelopatides53373-
Paelopatides53374-
Paelopatides53376-
Paelopatides53377BONUS, ISOFORM C-RELATED
Paelopatides53378ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides53379HEMOPEXIN DOMAIN-CONTAINING PROTEIN
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