About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53522ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
Paelopatides53523RETROTRANSPOSON
Paelopatides53524NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1
Paelopatides53525-
Paelopatides53526DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE-RELATED
Paelopatides53527TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2
Paelopatides53528-
Paelopatides53529SPERIOLIN
Paelopatides53530-
Paelopatides53531ZGC:158260
Paelopatides53532-
Paelopatides53533-
Paelopatides53534HMG DOMAIN-CONTAINING PROTEIN 3
Paelopatides53535-
Paelopatides53536INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides53537REVERSE TRANSCRIPTASES
Paelopatides53538ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides53539EPM2A-INTERACTING PROTEIN 1
Paelopatides53540CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides53541CXC DOMAIN-CONTAINING PROTEIN-RELATED
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