About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53623-
Paelopatides53624CELL DIVISION CYCLE 16,23,27
Paelopatides53625CELL DIVISION CYCLE 16,23,27
Paelopatides53626EPM2A-INTERACTING PROTEIN 1
Paelopatides53627EPM2A-INTERACTING PROTEIN 1
Paelopatides53628-
Paelopatides53629TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides53630IG-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides53631-
Paelopatides53632-
Paelopatides53633-
Paelopatides53634IG-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides53635-
Paelopatides53636PROTEIN CBG26694
Paelopatides53637PROTEIN CBG26694
Paelopatides53638REVERSE TRANSCRIPTASES
Paelopatides53639HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides53640PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4
Paelopatides53641PRE-MRNA SPLICING FACTOR-RELATED
Paelopatides53642E3 UBIQUITIN-PROTEIN LIGASE RAD18
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