About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53663FI04643P-RELATED
Paelopatides53664MORN REPEAT-CONTAINING PROTEIN 2
Paelopatides53665CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides53666-
Paelopatides53668NONSENSE-MEDIATED MRNA DECAY PROTEIN 3
Paelopatides53669NONSENSE-MEDIATED MRNA DECAY PROTEIN 3
Paelopatides53670PROTEIN CBG26694
Paelopatides53671-
Paelopatides53672STAR-RELATED LIPID TRANSFER PROTEIN 9
Paelopatides53673ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides53674-
Paelopatides53675-
Paelopatides53676STAR-RELATED LIPID TRANSFER PROTEIN 9
Paelopatides53677RIKEN CDNA D130052B06 GENE
Paelopatides53678-
Paelopatides53679FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides53680-
Paelopatides53681-
Paelopatides53682-
Paelopatides53683ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
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