About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53809NXPE FAMILY MEMBER
Paelopatides53811SULFITE REDUCTASE
Paelopatides53812SULFITE REDUCTASE
Paelopatides53813-
Paelopatides53814RRM DOMAIN-CONTAINING PROTEIN
Paelopatides53815TRANSFORMING GROWTH FACTOR ALPHA
Paelopatides53816FIBRILLIN-RELATED
Paelopatides53817ENDONUCLEASE-RELATED
Paelopatides53818-
Paelopatides53819POL PROTEIN
Paelopatides53820-
Paelopatides53821DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides53822MUCIN 4-RELATED
Paelopatides53823CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides53824CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides53825CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides53826CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides53827LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Paelopatides53828REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides53829-
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