Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s020.g0283.t1 | TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED |
| Lsat_s020.g0284.t1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Lsat_s020.g0285.t1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Lsat_s020.g0286.t1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
| Lsat_s020.g0287.t1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Lsat_s020.g0288.t1 | |
| Lsat_s020.g0289.t1 | PYRUVATE DEHYDROGENASE KINASE |
| Lsat_s020.g0290.t1 | CYTOSINE DEAMINASE FAMILY MEMBER |
| Lsat_s020.g0291.t1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Lsat_s020.g0292.t1 | |
| Lsat_s020.g0293.t1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Lsat_s020.g0294.t1 | |
| Lsat_s020.g0295.t1 | NITRIC OXIDE SYNTHASE-RELATED |
| Lsat_s020.g0296.t1 | |
| Lsat_s020.g0297.t1 | FMS INTERACTING PROTEIN |
| Lsat_s020.g0298.t1 | |
| Lsat_s020.g0299.t1 | RETINAL PROTEIN 4 |
| Lsat_s020.g0300.t1 | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 |
| Lsat_s020.g0301.t1 | |
| Lsat_s020.g0302.t1 | RABPHILIN, ISOFORM A |
| Lsat_s020.g0303.t1 | |
| Lsat_s020.g0304.t1 | |
| Lsat_s020.g0305.t1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Lsat_s020.g0306.t1 | |
| Lsat_s020.g0307.t1 | |
| Lsat_s020.g0308.t1 | NUCLEAR RECEPTOR CO-REPRESSOR RELATED NCOR |
| Lsat_s020.g0309.t1 | B9 DOMAIN-CONTAINING |
| Lsat_s020.g0310.t1 | E3 UBIQUITIN-PROTEIN LIGASE HECTD4-RELATED |
| Lsat_s020.g0311.t1 | E3 UBIQUITIN-PROTEIN LIGASE HECTD4-RELATED |
| Lsat_s020.g0312.t1 | GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN |
| Lsat_s020.g0313.t1 | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED |
| Lsat_s020.g0314.t1 | |
| Lsat_s020.g0315.t1 | PCD6 INTERACTING PROTEIN-RELATED |
| Lsat_s020.g0316.t1 | |
| Lsat_s020.g0317.t1 | |
| Lsat_s020.g0318.t1 | POTASSIUM CHANNEL, SUBFAMILY K |
| Lsat_s020.g0319.t1 | POTASSIUM CHANNEL, SUBFAMILY K |
| Lsat_s020.g0320.t1 | |
| Lsat_s020.g0321.t1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Lsat_s020.g0322.t1 | |
| Lsat_s020.g0323.t1 | HAUS AUGMIN-LIKE COMPLEX SUBUNIT 1 |
| Lsat_s020.g0324.t1 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Lsat_s020.g0325.t1 | POLYCYSTIN FAMILY MEMBER |
| Lsat_s020.g0326.t1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Lsat_s020.g0327.t1 | |
| Lsat_s020.g0328.t1 | |
| Lsat_s020.g0329.t1 | |
| Lsat_s020.g0330.t1 | |
| Lsat_s020.g0331.t1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Lsat_s020.g0332.t1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
