About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides50039-
Paelopatides50040DETERIN
Paelopatides50041UNCHARACTERIZED
Paelopatides50042PROTEIN KINASE C, MU
Paelopatides50043SI:CH211-108C17.2-RELATED-RELATED
Paelopatides50044ZGC:195170
Paelopatides50045TRANSCRIPTION INITIATION FACTOR IA RRN3
Paelopatides50046-
Paelopatides50047HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides50048OPSIN
Paelopatides50049CENTROMERE PROTEIN M
Paelopatides50050-
Paelopatides50051ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides50052-
Paelopatides50053-
Paelopatides50054GLUTAMATE CYSTEINE LIGASE
Paelopatides50055F-BOX/WD REPEAT-CONTAINING PROTEIN 2
Paelopatides50056-
Paelopatides50057-
Paelopatides50058-
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