About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49978RING FINGER PROTEIN 127
Paelopatides49979MYELIN PROTEOLIPID
Paelopatides49980RING BOX
Paelopatides49981ENGULFMENT AND CELL MOTILITY
Paelopatides49982PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides49983-
Paelopatides49985ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides49986-
Paelopatides49987TYROSINE-PROTEIN KINASE
Paelopatides49988-
Paelopatides49989RETROTRANSPOSON
Paelopatides49990PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides49991SEPIAPTERIN REDUCTASE
Paelopatides49992-
Paelopatides49993-
Paelopatides49994-
Paelopatides49995GC-RICH SEQUENCE DNA-BINDING FACTOR
Paelopatides49996GC-RICH SEQUENCE DNA-BINDING FACTOR
Paelopatides49997HISTONE DEACETYLASE HDAC1-RELATED
Paelopatides49998TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED
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