About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides50019-
Paelopatides50020ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides50021PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER
Paelopatides5002234 KDA TRANSCRIPTIONAL CO-ACTIVATOR-RELATED
Paelopatides50023-
Paelopatides50024-
Paelopatides50025CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides50026-
Paelopatides50027NUCLEOBINDIN
Paelopatides50028-
Paelopatides50029TRANSCRIPTION INITIATION FACTOR IIH-RELATED
Paelopatides50030TRANSCRIPTION INITIATION FACTOR IIH-RELATED
Paelopatides50031SLR5058 PROTEIN
Paelopatides50032-
Paelopatides50033FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides50034BUCENTAUR RELATED
Paelopatides50035-
Paelopatides50036-
Paelopatides50037HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides50038-
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