About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49938-
Paelopatides49939ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides49940SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3
Paelopatides49941MORTALITY FACTOR 4-LIKE PROTEIN
Paelopatides49942SUCCINYL-COA--D-CITRAMALATE COA-TRANSFERASE
Paelopatides49943PROTEIN CBG26694
Paelopatides49944PIG-M MANNOSYLTRANSFERASE
Paelopatides49945PIG-M MANNOSYLTRANSFERASE
Paelopatides49946PHOSPHATIDYLINOSITOL GLYCAN, CLASS N
Paelopatides49947PHOSPHATIDYLINOSITOL GLYCAN, CLASS N
Paelopatides49948PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides49949RETROTRANSPOSON
Paelopatides49950RETROTRANSPOSON
Paelopatides49951LYR MOTIF-CONTAINING PROTEIN 1
Paelopatides49952-
Paelopatides49953-
Paelopatides49954-
Paelopatides49955PROTEIN PHOSPHATASE 2C
Paelopatides49956RP42 RELATED
Paelopatides49957-
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