About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49999GI:13385330
Paelopatides50000GI:13385330
Paelopatides500011-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED
Paelopatides50002TRANSLATION FACTOR GUF1-RELATED
Paelopatides50003-
Paelopatides500041-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED
Paelopatides50005HISTIDINE AMMONIA-LYASE
Paelopatides50006OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Paelopatides50007POL PROTEIN
Paelopatides50008HOST CELL FACTOR
Paelopatides50009HOST CELL FACTOR
Paelopatides50010UNCHARACTERIZED
Paelopatides50011-
Paelopatides50012CXXC-TYPE ZINC FINGER PROTEIN 1
Paelopatides50013EPM2A-INTERACTING PROTEIN 1
Paelopatides50014CXXC-TYPE ZINC FINGER PROTEIN 1
Paelopatides5001539S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATED
Paelopatides50016RNA-BINDING PROTEIN
Paelopatides50017-
Paelopatides50018ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
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