About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49958-
Paelopatides49959GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA
Paelopatides49960CATION-TRANSPORTING ATPASE-RELATED
Paelopatides49961DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides49962CYCLIN
Paelopatides49963DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides4996439S RIBOSOMAL PROTEIN L20
Paelopatides49965-
Paelopatides49966APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides49967-
Paelopatides49968-
Paelopatides49969-
Paelopatides49970OXIDOREDUCTASE-RELATED
Paelopatides49971OPSIN
Paelopatides49972BONUS, ISOFORM C-RELATED
Paelopatides49973BONUS, ISOFORM C-RELATED
Paelopatides49974-
Paelopatides49975NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides49976CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
Paelopatides49977REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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