About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides50059-
Paelopatides50060ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
Paelopatides500615-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATED
Paelopatides50062-
Paelopatides50063FATTY ACID ACYL TRANSFERASE-RELATED
Paelopatides50064FATTY ACID ACYL TRANSFERASE-RELATED
Paelopatides50065FATTY ACID ACYL TRANSFERASE-RELATED
Paelopatides50066RETROTRANSPOSON
Paelopatides50067EXODEOXYRIBONUCLEASE III
Paelopatides50068REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides50069ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides50070REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides50071PROTEIN CBG26694
Paelopatides50072TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides50073-
Paelopatides50074TRANSLATION ELONGATION FACTOR-RELATED
Paelopatides50075TRANSLATION ELONGATION FACTOR-RELATED
Paelopatides50076ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides50077RIIA DOMAIN-CONTAINING PROTEIN 1
Paelopatides50078PROTEIN CBG26694
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