About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides50104SORTING NEXIN
Paelopatides50105MYND-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides50106SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides50107SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides50108DNA-DIRECTED RNA POLYMERASE
Paelopatides50109EGF-LIKE-DOMAIN, MULTIPLE 7, 8
Paelopatides50110-
Paelopatides50111DNAJ HOMOLOG SUBFAMILY B MEMBER 9
Paelopatides50112CEREBLON
Paelopatides50113PHOSPHOLIPASE-RELATED
Paelopatides50114MAINTENANCE OF TELOMOERE CAPPING
Paelopatides50115-
Paelopatides50116PROTEIN CBG26694
Paelopatides50117-
Paelopatides50118COILED-COIL DOMAIN-CONTAINING PROTEIN 115
Paelopatides50119BCR-ASSOCIATED PROTEIN, BAP
Paelopatides50120REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides50121UNCHARACTERIZED
Paelopatides50123POL PROTEIN
Paelopatides50124PROTEIN CBG26694
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