About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides50079ENZYMATIC POLYPROTEIN-RELATED
Paelopatides50080FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides50081EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides50082EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides50083DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
Paelopatides50084DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
Paelopatides50085SPINSTER
Paelopatides5008650S/60S RIBOSOMAL PROTEIN L16
Paelopatides50087-
Paelopatides50088-
Paelopatides50089MONOCARBOXYLATE TRANSPORTER
Paelopatides50090DNA HELICASE RECQ FAMILY MEMBER
Paelopatides50091MONOCARBOXYLATE TRANSPORTER
Paelopatides50092ZGC:195170
Paelopatides50093CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides50094-
Paelopatides50100ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides50101SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides50102-
Paelopatides50103SORTING NEXIN
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