About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49704MATRIX METALLOPROTEINASE
Paelopatides49705-
Paelopatides49706FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides49707-
Paelopatides49708PROTEIN CBG26694
Paelopatides49709ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides49710FARNESYL-PYROPHOSPHATE SYNTHETASE
Paelopatides49711CHROMOSOME 20 ORF85 FAMILY MEMBER
Paelopatides49712GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT
Paelopatides49713REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides49714GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT
Paelopatides49715NEUGRIN
Paelopatides49716M7GPPPN-MRNA HYDROLASE
Paelopatides49717TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides49718OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides49719UNCHARACTERIZED
Paelopatides49720ZINC/IRON TRANSPORTER
Paelopatides49721RABCONNECTIN-RELATED
Paelopatides49722RABCONNECTIN-RELATED
Paelopatides49723PROTEIN FAM227B
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