About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49744GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
Paelopatides49745ZINC FINGER AND BTB DOMAIN-CONTAINING
Paelopatides49746PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE
Paelopatides49747BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Paelopatides49748-
Paelopatides49749ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides49750FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides49751CYTOCHROME P450 FAMILY 3
Paelopatides49752TESTIS-SPECIFIC Y-ENCODED PROTEIN
Paelopatides49753EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I
Paelopatides49754-
Paelopatides49755FANCONI-ASSOCIATED NUCLEASE 1
Paelopatides49756-
Paelopatides49758KATANIN P80 SUBUNIT
Paelopatides49759MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM21
Paelopatides49760CYCLINS
Paelopatides49761-
Paelopatides49762-
Paelopatides49763ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides49764CXC DOMAIN-CONTAINING PROTEIN-RELATED
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