About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49684-
Paelopatides49685SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
Paelopatides49686AP COMPLEX SUBUNIT MU
Paelopatides49687RETROTRANSPOSON
Paelopatides49688PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides49689RETROTRANSPOSON
Paelopatides49690PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides49691PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides49692-
Paelopatides49693-
Paelopatides49694REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides49695FAS-BINDING FACTOR 1
Paelopatides49696CYTOCHROME P450 FAMILY 3
Paelopatides49697HEAT SHOCK PROTEIN 90 HSP90 CO-CHAPERONE AHA-1
Paelopatides49698DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides49699-
Paelopatides49700G-PROTEIN COUPLED RECEPTOR
Paelopatides49701PROSTAGLANDIN REDUCTASE
Paelopatides49702CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides49703REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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