About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49594RETROTRANSPOSON
Paelopatides49595-
Paelopatides49596FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides49597REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides49600HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED
Paelopatides49601LEUCINE RICH REPEAT PROTEIN
Paelopatides49602INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides49603TRANSPOSASE, PUTATIVE-RELATED
Paelopatides49604S-ANTIGEN PROTEIN
Paelopatides49605-
Paelopatides49606PROTEIN EVA-1
Paelopatides49607-
Paelopatides49608CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides49609CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides49610-
Paelopatides49611L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides49612-
Paelopatides49613-
Paelopatides49614CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides49615CXC DOMAIN-CONTAINING PROTEIN-RELATED
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