About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49463G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER
Paelopatides49464PLACENTAL PROTEIN 11-RELATED
Paelopatides49465-
Paelopatides49466-
Paelopatides49467-
Paelopatides49468FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides49469CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Paelopatides49470REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides49471CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED
Paelopatides49472MAP/MICROTUBULE AFFINITY-REGULATING KINASE
Paelopatides49473-
Paelopatides49474SI:CH211-108C17.2-RELATED-RELATED
Paelopatides49475TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides49476EPM2A-INTERACTING PROTEIN 1
Paelopatides49478-
Paelopatides49479-
Paelopatides49481ALPHA-TECTORIN-RELATED
Paelopatides49482SI:CH211-196P9.1-RELATED
Paelopatides49483ENDONUCLEASE-RELATED
Paelopatides49484POL PROTEIN
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