About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49338REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides49339ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides49340-
Paelopatides49341-
Paelopatides49342ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides49343C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180
Paelopatides49344MITOCHONDRIAL RIBOSOMAL PROTEIN L37
Paelopatides49345INTERLEUKIN-1 RECEPTOR FAMILY MEMBER
Paelopatides49346CONTACTIN 5
Paelopatides49347MULTICOPPER OXIDASE-RELATED
Paelopatides49348CALPAIN
Paelopatides49349CALPAIN
Paelopatides49350-
Paelopatides49351-
Paelopatides49352REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides49353-
Paelopatides49354PROTEIN BUD31-RELATED
Paelopatides49355UNCHARACTERIZED
Paelopatides49356ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides49357BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
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