About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49273HEPARAN SULFATE SULFOTRANSFERASE
Paelopatides49274HEPARAN SULFATE SULFOTRANSFERASE
Paelopatides49275CELL DIVISION CYCLE 16,23,27
Paelopatides49276FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides49277FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides49278L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides49279-
Paelopatides49280FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides49281-
Paelopatides49282FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides49284-
Paelopatides49286MULTI-COPPER OXIDASE
Paelopatides49287-
Paelopatides49288SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides49289REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides49290ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides49291BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
Paelopatides49292TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
Paelopatides49293-
Paelopatides49294-
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