About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49210-
Paelopatides49211-
Paelopatides49212-
Paelopatides49213XANTHINE DEHYDROGENASE
Paelopatides49214-
Paelopatides49215UBIQUILIN
Paelopatides49216TRANSPOSABLE ELEMENT-RELATED
Paelopatides49217ALPHA-MANNOSIDASE 2C1
Paelopatides49218ALPHA-MANNOSIDASE 2C1
Paelopatides49219DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE
Paelopatides49220-
Paelopatides49221PROTEIN PM1
Paelopatides49222AMINE OXIDASE
Paelopatides49223-
Paelopatides49224FK506-BINDING PROTEIN 15
Paelopatides49225FK506-BINDING PROTEIN 15
Paelopatides49226PR DOMAIN ZINC FINGER PROTEIN
Paelopatides49227PROTEIN CBG23806
Paelopatides49228TRANSCRIPTIONAL REPRESSOR PROTEIN YY
Paelopatides49229SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN
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