About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49108PROTEIN CBG26694
Paelopatides49109ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides49110-
Paelopatides49111SENSOR KINASE-RELATED
Paelopatides49112SENSOR KINASE-RELATED
Paelopatides49113OLIGOSACCHARYLTRANSFERASE COMPLEX SUBUNIT OSTC
Paelopatides49114BLEOMYCIN HYDROLASE
Paelopatides49115BLEOMYCIN HYDROLASE
Paelopatides49116VESICLE PROTEIN SORTING-ASSOCIATED
Paelopatides49117REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides49118HUNTINGTIN INTERACTING PROTEIN 1
Paelopatides49119-
Paelopatides49120HUNTINGTIN INTERACTING PROTEIN 1
Paelopatides49121-
Paelopatides49122-
Paelopatides49123E3 UBIQUITIN-PROTEIN LIGASE TRIM37
Paelopatides49124E3 UBIQUITIN-PROTEIN LIGASE TRIM37
Paelopatides49125-
Paelopatides49126T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
Paelopatides49127CYCLIN
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