About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49148ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides49149L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides49150SORTING NEXIN-29-RELATED
Paelopatides49151PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides49152CXXC-TYPE ZINC FINGER PROTEIN 1
Paelopatides49153-
Paelopatides49154ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides49155ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides49156-
Paelopatides49157-
Paelopatides49158SI:CH211-196P9.1-RELATED
Paelopatides49159UBX DOMAIN-CONTAINING PROTEIN 1
Paelopatides49160-
Paelopatides49161BLOC-1 COMPLEX SUBUNIT 1
Paelopatides49162PYM PROTEIN
Paelopatides49163CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides49164CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides49165PROTEIN CBG26694
Paelopatides49166REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides49167INTEGRIN ALPHA
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