About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49088RETROTRANSPOSON
Paelopatides49089RETROTRANSPOSON
Paelopatides49090-
Paelopatides49091-
Paelopatides49092CALCIUM-BINDING PROTEIN 8-RELATED
Paelopatides49093TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides49094-
Paelopatides49095ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides49096SERINE/THREONINE PROTEIN KINASE
Paelopatides49097-
Paelopatides49098POL PROTEIN
Paelopatides49099ENDONUCLEASE-RELATED
Paelopatides49100-
Paelopatides49101CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides49102-
Paelopatides49103ENDONUCLEASE
Paelopatides49104-
Paelopatides49105ZGC:195170
Paelopatides49106PROTEIN CBG26694
Paelopatides49107ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
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