About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides48987-
Paelopatides48988RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN
Paelopatides48989INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Paelopatides48990COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides48991MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN
Paelopatides48992-
Paelopatides48993EPM2A-INTERACTING PROTEIN 1
Paelopatides48994HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides48995E3 UBIQUITIN-PROTEIN LIGASE E3D FAMILY MEMBER
Paelopatides48996-
Paelopatides48997-
Paelopatides48998NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides48999RIBOSOMAL PROTEIN L2
Paelopatides49000UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49
Paelopatides49001-
Paelopatides49002PROTEIN CBG26694
Paelopatides49003ENDONUCLEASE-RELATED
Paelopatides49004POL PROTEIN
Paelopatides49005HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
Paelopatides49006RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
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