About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49007-
Paelopatides49008REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides49009RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides49010RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides49011DOUBLECORTIN DOMAIN CONTAINING 2
Paelopatides49012CONDENSIN-2 COMPLEX SUBUNIT H2
Paelopatides49013-
Paelopatides49014ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides49015SUPPRESSOR OF VARIEGATION 4-20-RELATED
Paelopatides49016MALONYL-COA ACP TRANSACYLASE, ACP-BINDING
Paelopatides49017ENDONUCLEASE-RELATED
Paelopatides49018MALONYL-COA ACP TRANSACYLASE, ACP-BINDING
Paelopatides49019ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides49020-
Paelopatides49021-
Paelopatides49022UNCHARACTERIZED
Paelopatides49023CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides49024CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides49025-
Paelopatides49026-
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