About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49047ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides49048SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides49049-
Paelopatides49050MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides49051-
Paelopatides49052SODIUM/NUCLEOSIDE COTRANSPORTER
Paelopatides49053ORGANIC ANION TRANSPORTER
Paelopatides49054PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides49055DNA HELICASE RECQ FAMILY MEMBER
Paelopatides49056DNA HELICASE RECQ FAMILY MEMBER
Paelopatides49057L-GULONOLACTONE OXIDASE
Paelopatides49058SODIUM-BILE ACID COTRANSPORTER
Paelopatides49059CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides49060CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides49061-
Paelopatides49062-
Paelopatides49063CARBOHYDRATE SULFOTRANSFERASE
Paelopatides49064NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides49065SEPTIN
Paelopatides49066BARDET-BIEDL SYNDROME 7 PROTEIN
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