About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49027DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides49028-
Paelopatides49029PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides49030FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides49031B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides49032ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
Paelopatides49033-
Paelopatides49034NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides49035-
Paelopatides49036REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides49037POL PROTEIN
Paelopatides49038-
Paelopatides49039-
Paelopatides49040CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Paelopatides49041-
Paelopatides49042REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides49043-
Paelopatides49044NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides49045-
Paelopatides49046ATP-BINDING CASSETTE SUB-FAMILY C
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