About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49358PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides49359CYTOCHROME P450 508A4-RELATED
Paelopatides49360ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides49361REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides49362REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides49363PROTEIN CBG26694
Paelopatides49364-
Paelopatides49365BUCENTAUR RELATED
Paelopatides49366CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides49367-
Paelopatides49368PROTEIN CBG26694
Paelopatides49369T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Paelopatides49370-
Paelopatides49371ZINC FINGER AND SCAN DOMAIN-CONTAINING
Paelopatides49372FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides49373FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides49374-
Paelopatides49375FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides49376-
Paelopatides49377TRAF AND TNF RECEPTOR-ASSOCIATED PROTEIN
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