About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49378INTIMAL THICKNESS RECEPTOR-RELATED
Paelopatides49379-
Paelopatides49380DYNEIN ASSEMBLY FACTOR 3, AXONEMAL
Paelopatides49381-
Paelopatides49382SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
Paelopatides49383-
Paelopatides49384-
Paelopatides49385PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides49386ATP-BINDING CASSETTE SUB-FAMILY B
Paelopatides493875'-NUCLEOTIDASE-RELATED
Paelopatides49388-
Paelopatides49389PROTEIN CBG23806
Paelopatides49391PROTEIN CBG26694
Paelopatides49392THAP DOMAIN PROTEIN
Paelopatides49393PROTEIN CBG26694
Paelopatides49394POL PROTEIN
Paelopatides49395FI04487P
Paelopatides49396HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides49397FI04487P
Paelopatides49398-
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