About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49485PARANEOPLASTIC ANTIGEN
Paelopatides49486TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER
Paelopatides49487-
Paelopatides49488EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides49489FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides49490BUCENTAUR RELATED
Paelopatides49491NEUROBLAST DIFFERENTIATION-ASSOCIATED PROTEIN AHNAK-LIKE PROTEIN
Paelopatides49492AGAP011572-PA
Paelopatides49493-
Paelopatides49494TRNA WYBUTOSINE-SYNTHESIZING PROTEIN 4
Paelopatides49495CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN B
Paelopatides49496-
Paelopatides49497PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides49498SERINE/THREONINE-PROTEIN KINASE FRAY2
Paelopatides49499STERILE20-LIKE KINASE, ISOFORM B-RELATED
Paelopatides49500INTEGRIN ALPHA
Paelopatides49501INTEGRIN ALPHA
Paelopatides49502ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides49503-
Paelopatides49504-
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