About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49724-
Paelopatides49725STEROL O-ACYLTRANSFERASE
Paelopatides49726-
Paelopatides49727PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides49728-
Paelopatides49729SLIT HOMOLOG
Paelopatides49730CRUMBS FAMILY MEMBER
Paelopatides49731-
Paelopatides49732-
Paelopatides49733CENTROSOMAL PROTEIN-RELATED
Paelopatides49734GAF/PUTATIVE CYTOSKELETAL PROTEIN
Paelopatides49735WD40 REPEAT FAMILY
Paelopatides49736-
Paelopatides49737SLR1189 PROTEIN
Paelopatides49738-
Paelopatides49739-
Paelopatides49740D-ALANYL-D-ALANINE CARBOXYPEPTIDASE
Paelopatides49741ENDONUCLEASE-RELATED
Paelopatides49742MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23
Paelopatides49743MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23
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