About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides47731SCAVENGER RECEPTOR DOMAIN-CONTAINING
Paelopatides477322-HACID_DH_C DOMAIN-CONTAINING PROTEIN
Paelopatides477332-HYDROXYACID DEHYDROGENASE-RELATED
Paelopatides47734-
Paelopatides47735REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides47737METABOTROPIC GLUTAMATE RECEPTOR
Paelopatides47738NUCLEOSIDE DIPHOSPHATE KINASE
Paelopatides47739TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13
Paelopatides47740IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED
Paelopatides47741REVERSE TRANSCRIPTASES
Paelopatides47742UNCHARACTERIZED
Paelopatides47743-
Paelopatides47744F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides47745VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG
Paelopatides47746B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides47747TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides47748ENDONUCLEASE-RELATED
Paelopatides47749-
Paelopatides47750APPLE DOMAIN-CONTAINING PROTEIN
Paelopatides47751REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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